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Published Histories | suimye | suimye_tutorial_AJACS2016
Import history

Galaxy History ' suimye_tutorial_AJACS2016'

Annotation: ChIP-Seq of Pax7 and Pax3 in myoblasts (GSE25064).

DatasetAnnotation
16: tap_pax7.chr19.sam
~360,000 lines
format: sam, database: mm10
1.QNAME2.FLAG3.RNAME4.POS5.MAPQ6.CIGAR7.MRNM8.MPOS9.ISIZE10.SEQ11.QUAL12.OPT
SRR071249.12974936 16 chr19 3000014 1 36M * 0 0 ATGCTGGACATTCTGGTTCCTAGTATATCTGGAGAG HHHHGHGHHHHGHHHHHHHHHHHHHHHGBGGHHHHH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:36 YT:Z:UU
SRR071249.4735669 0 chr19 3000034 1 36M * 0 0 TAGTATATCTGGAGAGTTAAGATGGGGAATTATGTC GG3GGGGGGGGGAGEFDFDDFFAF?F?DGGGGCGAA AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:36 YT:Z:UU
SRR071249.11597338 0 chr19 3000179 1 36M * 0 0 CAGGCTCTGCAAGAAAATAGAATTTTCTTCATACAG F@FHBC=GGA@DCCDFBCDGHHDEHF8F=@FHHHFD AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:36 YT:Z:UU
SRR071249.3577826 16 chr19 3000251 1 36M * 0 0 GATAAGAGTCAATGCCTATCCTTGTATAATCAATCA ;FGFGAHBHHHHHBH@HEHHFHHGHHHGHHHHIHEH AS:i:-5 XS:i:-5 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:15A20 YT:Z:UU
SRR071249.9117490 16 chr19 3000256 1 36M * 0 0 GAGTCAATGCATATCCTTGTATAATCAATCATCAGC BHBHHHHHHHHHHHIHHHHHHHHHHHHHH=HHDHHH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:36 YT:Z:UU
SRR071249.16434264 16 chr19 3000274 1 36M * 0 0 GTAAAATCAATCATCAGCCTGGTTAAAAAGGGCCTC FDA8DAG?FFGAAFAFD=DDD9=CCC>/A>?5A5>9 AS:i:-4 XS:i:-4 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:3T32 YT:Z:UU
None
23: Ctrl.chr19.sam
~450,000 lines, 68 comments
format: sam, database: mm10
1.QNAME2.FLAG3.RNAME4.POS5.MAPQ6.CIGAR7.MRNM8.MPOS9.ISIZE10.SEQ11.QUAL12.OPT
@HD VN:1.0 SO:coordinate
@SQ SN:chr1 LN:195471971
@SQ SN:chr2 LN:182113224
@SQ SN:chr3 LN:160039680
@SQ SN:chr4 LN:156508116
@SQ SN:chr5 LN:151834684
24: mm10-blacklist_lo.bed
3,010 regions
format: bed, database: mm10
1.Chrom2.Start3.End
chr131386193139719
chr11264381912645719
chr11295891912959919
chr11495941914960519
chr12461076124616961
chr12480695524808855
25: Pasted Entry
1 region
format: bed, database: mm10
1.Chrom
blacklist generated from mm9 using liftOver