What it does
This tool allows ChIP-seq peak calling using MACS.
Depending upon selected options, 2 to 6 history items will be created; the first output will be a standard BED file and the last will be an HTML report containing links to download additional files generated by MACS. Up to two each of wig and interval files can be optionally created; the interval files are parsed from the xls output.
View the original MACS documentation: http://liulab.dfci.harvard.edu/MACS/00README.html.
For the underlying tool, please cite Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.
If you use this tool in Galaxy, please cite Blankenberg D, et al. In preparation.