CCAT

What it does

This tool allows ChIP-seq peak/region calling using CCAT.

View the original CCAT documentation: http://cmb.gis.a-star.edu.sg/ChIPSeq/paperCCAT.htm.


Citation

For the underlying tool, please cite Xu H, Handoko L, Wei X, Ye C, Sheng J, Wei CL, Lin F, Sung WK. A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics. 2010 May 1;26(9):1199-204.

If you use this tool in Galaxy, please cite Blankenberg D, et al. In preparation.