(di)ChipMunk
multi-fasta file containing sequences on which ChIPMunk will be preformed.
.wig file with base coverage information.
Genome used to fetch genomic sequences.

What it does

This tool generates peak multi-fasta files in order to make the best of ChIPMunk usage. This is highly recommanded for ChIP-seq data.

How it does it

This tool simply places the positional profiles exacted from a provided 'wiggle' file along the fasta headers of the respective sequences on which ChIPMunk will be preformed.

Input

Note that it is not mandetory to provide all the sequences that the wig file covers. You can choose to focus on a group (top peaks.. ?).

Output

The resulting ready-to-use peak multi-fasta file:

> 1.0 2.0 3.0 2.0 1.5 2.0
AGTAAC
> 1.0 2.0 3.0 2.0 1.5
CAGTA
...

In this case, when using ChIPMunk, one must set "Type of the sequence set" to "Peak data".