Circos
ex: hs2;hs3 or -hsX;-hsY

What it does

Circos

Manual documentation available at the http://circos.ca/

Example of link segdup file

segdup file:

1   hs1     1077096 1078746 color=red
1   hs1     1080923 1082805 color=red
2   hs1     1137684 1137961 color=red
2   hs3     1138138 1138423 color=red
3   hs11    1169417 1170000 color=red
3   hs11    1170025 1170975 color=red
4   hs11    1222480 1224271 color=green
4   hs11    1223328 1225675 color=green
5   hs12    1223336 1225812 color=grey
5   hs13    1224709 1227633 color=grey
6   hs11    1223621 1226460 color=red
6   hs11    1224918 1227633 color=red
7   hs11    1399510 1401513 color=white
7   hs11    1401628 1403697 color=white
8   hs15    1652045 1653746 color=red
8   hs15    1657167 1658940 color=red
9   hs11    165333  165887  color=white
9   hs11    165981  168016  color=white
10  hs11    1702700 1702841 color=red
10  hs11    1702903 1703057 color=red
11  hs11    1912272 1915186 color=white
11  hs11    1937111 1939824 color=white
12  hs11    1983211 1983355 color=red
12  hs11    1983591 1983748 color=red
13  hs11    2913657 2913898 color=white
13  hs11    2914048 2914341 color=white
14  hs11    3090593 3090749 color=purple
14  hs11    3090709 3090864 color=purple
15  hs21    3466365 3466434 color=red
15  hs21    3466554 3466620 color=red
16  hsX     3603073 3603321 color=white
16  hsX     3603295 3603520 color=white

Contact Bruno Zeitouni (svdetect@curie.fr) for any questions or concerns about the Galaxy implementation of Circos.